Help - Tree list view

Listing marked information.

Wired-Marker can make a list of marker information included in a specified folder.

Right-click a folder you would like to see marker information list, select “Tree list view” and any style sub menu from the context menu.


Customizing Tree list view

Users can add own style template for tree list view.

Right-click a folder in the side bar and select “Tree list view” - "Style sheet” - “Add...” from the context menu. A dialog box opens subsequently.

Please refer to below document about the format of stylesheets.

Tags Descriptions
LIST A root element / window title.
FOLDER A folder element.
FID_TITLE A folder title element.
ID A unique identifier element that recognize the folder or object.
CHILDID Identifiers of child element(s). In case of having multiple elements, separated by commas.
OBJECT An object element.
OID_TITLE A title property element of an object.
OID_NOTE A note property element of an object.
OID_TXT A content element of an object.
OID_IMG An image element of an object. The format is "data:CONTENT TYPE;base64,base64 ENCODED BINARY DATA"
Example) data:image/png;base54,iVBORw0KGgoAA...

In the case of converting to HTML documents by using stylesheets, the image can be shown by transmitting this content to "src" attribute of <img> tag. (please refer to the stylesheet description below.)
<xsl:attribute name="src">
<xsl:value-of select="OID_IMG"/>
</xsl:attribute>
OID_STRUCTURE A structural element of an object. The content is part of HTML that represents the imported table from a HTML document.

In the case of converting the HTML documents by using stylesheets, the imported table is shown by outputing the content. (please refer to the stylesheet description below.)
<xsl:copy-of select="OID_STRUCTURE"/>
DOC_URL A URL element of the document.
BGN_DOM An element that represents the start position of an object in the document, described by extended XPath.
END_DOM An element that represents the end position of an object in the document, described by extended XPath.
DBTYPE An information element of the database which the object belong to.
OID An identifier element of an object.

The XML below is the sample of the actual content of an XML file. 

<?xml version="1.0" encoding="utf-8"?>
<?xml-stylesheet type="text/xsl" href="20070314010401.xsl"?>
<!DOCTYPE LIST>
<LIST title="Marker1">
  <FOLDER>
    <FID_TITLE>Marker1</FID_TITLE>
    <ID>20070314010401</ID>
    <CHILDID>20070314023043,20070314023058</CHILDID>
    <OBJECT>
      <OID_TITLE>JNK</OID_TITLE>
      <ID>20070314023043</ID>
      <OID_NOTE>c-Jun NH2-terminal kinase</OID_NOTE>
      <OID_TXT>JNK</OID_TXT>
      <DOC_URL>http://cancerres.aacrjournals.org/cgi/content/abstract/62/11/3257</DOC_URL>
      <BGN_DOM>//A[@name="top"]/following-sibling::P[2](46)(3)</BGN_DOM>
      <END_DOM>//A[@name="top"]/following-sibling::P[2](49)(3)</END_DOM>
      <DBTYPE>local</DBTYPE>
      <OID>20070314023043</OID>
    </OBJECT>
    <OBJECT>
      <OID_TITLE>JNK2AS</OID_TITLE>
      <ID>20070314023058</ID>
      <OID_NOTE>JNK2 antisense oligonucleotides</OID_NOTE>
      <OID_TXT>JNK2AS</OID_TXT>
      <DOC_URL>http://cancerres.aacrjournals.org/cgi/content/abstract/62/11/3257</DOC_URL>
      <BGN_DOM>//A[@name="top"]/following-sibling::P[2](213)(3)</BGN_DOM>
      <END_DOM>//A[@name="top"]/following-sibling::P[2](219)(3)</END_DOM>
      <DBTYPE>local</DBTYPE>
      <OID>20070314023058</OID>
    </OBJECT>
  </FOLDER>
</LIST>

Second, a description of how to edit the title or comment of an object directly.
The attributes below need to be added to the HTML tag with edited title or comment, on converting the XML file content to the HTML document by using stylesheets.

Attribute Description
edit Cotents of tag is editable or not. Always "true".
type Contents of tag is "title" or "note".
title
note
oid Object identifier of object.
dbtype A database information in which the object is belonging.

Caution : encoding of stylesheet must be "UTF-8".